ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 1662.40 0.03 1.95 44.83 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 2546.00 0.04 2.99 91.29 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 2715356.00 44.63 3187.83 99.21 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 168.00 0.00 0.20 51.22 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 93398.00 1.54 109.65 99.53 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 2561.00 0.04 3.01 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 1391495.00 22.87 1633.62 99.91 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 3458.00 0.06 4.06 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 258.00 0.00 0.30 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 847.00 0.01 0.99 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 5634.00 0.09 6.61 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 1656.00 0.03 1.94 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 761.00 0.01 0.89 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 44094.00 0.72 51.77 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 609.00 0.01 0.71 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 696.00 0.01 0.82 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 296325.00 4.87 347.89 74.63 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 199.00 0.00 0.23 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 986561.00 16.22 1158.22 97.42 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 390.00 0.01 0.46 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 217.00 0.00 0.25 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 17.00 0.00 0.02 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 208571.00 3.43 244.86 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 907.00 0.01 1.06 73.2 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1917.09 0.03 2.25 51.7 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)