ENCFF000IZM

Library Details

Organism: Homo Sapiens
Biosample: hematopoietic multipotent progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSR
Description: Part of ENCODE experiment ENCSR000CSR. The libraries contained in this experiment come from whole cell extracts from independent isolates of, mobilized CD34+ precursor blood cells. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 45306.00 21.95 4641.87 94.67 GAS5-230 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 545.00 0.26 55.84 100.0 GAS5-230 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 91486.00 44.33 9373.28 81.5 GAS5-230 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3072.00 81.29 314.74 100.0 ENST00000651540 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 39729.00 15.08 4070.47 99.02 SNHG29-232 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 201753.00 76.57 20670.78 92.76 SNHG29-232 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 829.00 0.31 84.94 100.0 SNHG29-232 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 33.00 0.01 3.38 100.0 SNHG29-232 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 0.21 0.10 100.0 SNHG14-234 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4805.00 17.07 492.30 100.0 SNHG1-248 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 5501.00 19.55 563.61 100.0 SNHG1-248 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 7806.00 27.74 799.77 100.0 SNHG1-248 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 1.00 0.05 0.10 100.0 SNHG14-315 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 556.00 3.87 56.97 100.0 SNHG5-273 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 5497.00 38.23 563.20 75.65 SNHG5-273 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 4247.00 29.54 435.13 82.37 SNHG5-273 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 455.00 68.94 46.62 100.0 SNHG14-336 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5575.00 71.94 571.19 100.0 NCL-216 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 760.81 38.00 77.95 81.11 SNHG19-202 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 262.25 13.10 26.87 42.85 SNHG19-202 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 1254.00 41.93 128.48 100.0 SNHG8-214 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 333.00 59.04 34.12 100.0 ENST00000722183 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 8.00 80.00 0.82 100.0 ENST00000747512 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 8.00 0.04 0.82 100.0 ENST00000772672 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 15269.00 84.16 1564.40 100.0 ENST00000772672 lncRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)