ENCFF000IZM

Library Details

Organism: Homo Sapiens
Biosample: hematopoietic multipotent progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSR
Description: Part of ENCODE experiment ENCSR000CSR. The libraries contained in this experiment come from whole cell extracts from independent isolates of, mobilized CD34+ precursor blood cells. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 44.55 12.99 4.56 43.67 RNU5A-1-201 snRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 72.00 20.99 7.38 75.79 RNU5A-1-201 snRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 26.45 7.71 2.71 40.08 RNU5A-1-201 snRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 84.00 39.44 8.61 100.0 7SK.1-201 misc RNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 11.00 1.55 1.13 91.67 SNORD83A-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 5.00 0.70 0.51 100.0 SNORD83A-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 5.00 0.10 0.51 100.0 SNORD90-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 2776.00 57.67 284.42 100.0 SNORD12B-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 1049.00 21.79 107.48 100.0 SNORD12B-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 1.23 0.10 100.0 SNORD62B-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 7901.00 91.46 809.50 100.0 SNHG3-202 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2703.00 63.77 276.94 100.0 SNORD124-201 snoRNA hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.16 0.31 100.0 RPL3-212 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 1053.00 56.04 107.89 69.05 RPL3-212 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 9.00 0.04 0.92 100.0 RPL13A-212 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12585.00 58.45 1289.41 100.0 RPL13A-212 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 525.00 2.44 53.79 100.0 RPL13A-212 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4501.00 26.96 461.15 100.0 RPL7A-207 protein coding CDS not defined hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 9340.00 55.93 956.94 100.0 RPL7A-207 protein coding CDS not defined hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3671.00 54.77 376.12 100.0 RABGGTB-213 protein coding CDS not defined hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 677.00 10.10 69.36 100.0 RABGGTB-213 protein coding CDS not defined hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 1.00 0.01 0.10 100.0 RABGGTB-213 protein coding CDS not defined hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 96.00 0.03 9.84 100.0 RPL5-205 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 325937.00 98.07 33394.16 99.72 RPL5-205 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 631.00 46.09 64.65 100.0 RACK1-230 retained intron hematopoietic multipotent progenitor cell (In vitro differentiated cells)