ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 35.00 92.11 0.17 100.0 MEG8-253 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 11.00 3.05 0.05 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 156.00 43.21 0.76 100.0 MEG9-206 lncRNA stomach (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1451.00 12.57 7.07 100.0 DNAJC5-203 nonsense mediated decay stomach (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1791.00 45.15 8.73 100.0 ENST00000707189 TEC stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 2.00 0.00 0.01 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 24937.84 40.20 121.51 43.91 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 46.00 0.07 0.22 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 35655.94 57.48 173.73 61.68 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 629.00 1.01 3.06 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 157.00 0.25 0.76 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 80.00 0.13 0.39 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 133.00 0.21 0.65 100.0 MIR17HG-214 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 2886.00 2.39 14.06 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 201.00 0.17 0.98 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 20.00 0.02 0.10 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2909.00 2.41 14.17 75.85 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 112952.00 93.51 550.34 100.0 SNHG32-223 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 13992.00 91.71 68.17 98.11 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 421.00 2.76 2.05 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 17.00 0.11 0.08 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 4.00 0.03 0.02 100.0 SNHG32-227 lncRNA stomach (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 735.00 85.56 3.58 100.0 B4GALT1-203 nonsense mediated decay stomach (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 675.00 6.07 3.29 100.0 ENST00000722183 lncRNA stomach (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1470.00 13.22 7.16 85.22 ENST00000722183 lncRNA stomach (Tissue)