ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 35629.00 6.06 173.60 99.72 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 284.00 0.05 1.38 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 93.00 0.02 0.45 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 643.00 0.11 3.13 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 637.00 0.11 3.10 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 282.00 0.05 1.37 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 6838.00 1.16 33.32 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 104.00 0.02 0.51 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1014.00 0.17 4.94 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 47333.00 8.05 230.62 85.87 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 2619.00 0.45 12.76 88.36 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 28.00 0.00 0.14 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 18.00 0.00 0.09 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 12439.00 2.12 60.61 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1656.00 0.28 8.07 82.97 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 994.51 0.17 4.85 36.28 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 924.00 0.16 4.50 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1367.00 0.23 6.66 62.85 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 877.00 0.15 4.27 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 94.00 0.02 0.46 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1283.00 6.75 6.25 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 64.74 0.34 0.32 84.08 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 38.00 0.20 0.19 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 144.00 0.76 0.70 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 10.38 0.05 0.05 13.48 SNHG5-273 lncRNA stomach (Tissue)