ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 45.00 13.72 0.22 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 974.00 58.71 4.75 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 342.00 20.61 1.67 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 34495.49 58.29 168.07 62.31 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 19.91 0.03 0.10 30.63 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 8.00 0.01 0.04 100.0 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 39.19 0.07 0.19 60.3 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 181.00 29.97 0.88 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 218.00 36.09 1.06 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 195.00 4.18 0.95 100.0 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 769.00 16.48 3.75 72.27 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 786.00 16.85 3.83 77.13 SNHG14-224 lncRNA stomach (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 10078.47 7.85 49.11 45.08 5S_rRNA.20-201 rRNA pseudogene stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 290.00 4.61 1.41 100.0 HSPA9-211 retained intron stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1786.00 28.40 8.70 47.25 HSPA9-211 retained intron stomach (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5759.00 85.19 28.06 100.0 DNM3OS-205 lncRNA stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1398.00 0.22 6.81 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 141.00 0.02 0.69 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 5.00 0.00 0.02 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1630.00 0.26 7.94 89.07 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 11.00 0.00 0.05 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 402.00 0.06 1.96 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 319.00 0.05 1.55 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 423684.00 66.47 2064.33 99.85 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 238.00 0.04 1.16 100.0 GAS5-230 retained intron stomach (Tissue)