ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 363.00 2.78 0.27 100.0 RNVU1-7-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 14670.00 85.86 10.93 100.0 SNORD24-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 3579.00 87.63 2.67 100.0 Y_RNA.389-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 317.00 0.13 0.24 100.0 SNORD101-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 224400.00 91.34 167.26 98.32 SNORD101-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 154.00 0.06 0.11 100.0 SNORD101-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 4914.00 2.00 3.66 82.34 SNORD101-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 224640.00 96.12 167.43 100.0 SNORD37-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 373524.00 93.07 278.41 98.51 SNORD59A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 3799.00 63.84 2.83 100.0 SNORA7B-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 2402.00 76.11 1.79 100.0 SNORD14D-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 335.00 11.63 0.25 100.0 Y_RNA.555-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 4638.00 90.22 3.46 92.13 MIR25-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 33718.00 93.95 25.13 98.65 MIR99B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 4589.00 60.30 3.42 85.78 MIR23B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 2566.00 33.72 1.91 70.53 MIR23B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 14062.00 89.92 10.48 100.0 MIR203A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 5288.00 7.98 3.94 100.0 MIR199B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 52429.00 79.14 39.08 88.89 MIR199B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 597.00 89.51 0.44 100.0 MIR30B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 1137.00 82.99 0.85 100.0 MIR181D-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384857.1 ENST00000384857.1_61_83_+ 61–83 53.00 80.30 0.04 100.0 MIR508-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 68.00 94.44 0.05 100.0 MIR215-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 3493.00 0.40 2.60 100.0 MIR181A2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 197598.00 99.22 147.28 99.66 MIR191-201 miRNA smooth muscle cell (In vitro differentiated cells)