ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 1312.00 1.65 0.98 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 27.00 0.00 0.02 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 92242.00 5.40 68.75 41.82 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 2531.00 6.25 1.89 91.34 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 402.00 0.99 0.30 13.71 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 990.00 11.19 0.74 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 239166.00 42.05 178.26 84.49 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 115966.00 20.39 86.43 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 2763.00 23.12 2.06 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 116.00 4.78 0.09 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 1104.00 0.52 0.82 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 1355.00 3.50 1.01 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 601.00 1.55 0.45 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 2915.00 7.53 2.17 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 2263.00 5.84 1.69 58.72 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 2119.00 5.47 1.58 74.64 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 1506.00 3.89 1.12 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 13291.00 14.20 9.91 57.22 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 10154.00 10.85 7.57 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 4266.00 5.14 3.18 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 50.00 0.12 0.04 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 42.00 0.10 0.03 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 782.00 1.89 0.58 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 24264.00 58.49 18.09 90.37 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 1958.00 4.72 1.46 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA smooth muscle cell (In vitro differentiated cells)