ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 20.51 0.01 0.02 93.24 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3.60 0.00 0.00 72.05 SNHG19-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 33068.00 71.76 24.65 100.0 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 6010.00 13.04 4.48 87.97 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1803.00 3.91 1.34 100.0 MIR222HG-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 2.00 0.49 0.00 28.57 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 4.73 1.16 0.00 10.27 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 5.00 1.23 0.00 83.33 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 34.96 8.61 0.03 76.0 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 92.00 22.66 0.07 100.0 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 45.00 11.08 0.03 95.74 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 91.00 22.41 0.07 94.79 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 10.00 2.46 0.01 34.48 MIR302CHG-205 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 1196.00 20.22 0.89 100.0 RPSA-216 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 26.00 35.62 0.02 100.0 MIR99AHG-370 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 26.00 35.62 0.02 100.0 MIR99AHG-370 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 2282.00 93.56 1.70 100.0 HPS4-237 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 5.00 3.07 0.00 100.0 MEG8-253 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 4.00 2.31 0.00 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 9.00 5.20 0.01 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 40.00 23.12 0.03 100.0 MEG9-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1341.00 12.46 1.00 100.0 DNAJC5-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 589.00 6.89 0.44 100.0 ENST00000707189 TEC smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 245.00 0.15 0.18 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 43553.77 25.91 32.46 29.34 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)