ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 282552.00 2.83 210.60 76.56 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 109.00 0.00 0.08 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1253323.00 12.55 934.16 98.12 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 414.00 0.00 0.31 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 254.00 0.00 0.19 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 6.00 0.00 0.00 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 182274.00 1.83 135.86 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2684.00 0.03 2.00 75.01 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1816.56 0.02 1.35 48.21 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 502.00 0.01 0.37 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 2446.00 0.02 1.82 56.37 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1010.00 0.01 0.75 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 2087.00 0.02 1.56 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 8933.00 0.09 6.66 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 193952.00 32.47 144.56 100.0 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 204709.00 34.27 152.58 97.02 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 149617.00 25.05 111.52 93.63 SNHG14-315 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4115.00 0.18 3.07 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 989718.12 42.11 737.68 47.4 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 1627.00 0.07 1.21 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 651.00 0.03 0.49 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1246235.97 53.02 928.88 55.62 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 19642.00 0.84 14.64 93.09 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 159.00 0.01 0.12 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 8267.00 0.35 6.16 100.0 SNHG5-273 lncRNA smooth muscle cell (In vitro differentiated cells)