ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 23.00 0.07 0.02 100.0 MIR99AHG-262 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000660376.1 ENST00000660376.1_1_78_+ 1–78 35.00 1.32 0.03 100.0 SNHG14-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 4892.00 69.92 3.65 100.0 SNHG14-270 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 631.00 0.30 0.47 100.0 SNHG14-275 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 12.00 1.87 0.01 100.0 MIR9-2HG-225 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 72.00 11.23 0.05 96.0 MIR9-2HG-225 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 62.00 13.05 0.05 100.0 MEG8-233 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 172.00 36.21 0.13 100.0 MEG8-233 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 4356.00 2.21 3.25 100.0 SNHG14-278 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 166559.00 84.45 124.14 96.31 SNHG14-278 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 584.00 28.42 0.44 100.0 MEG8-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 606.00 29.49 0.45 100.0 MEG8-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 11983.00 87.17 8.93 100.0 SNHG17-252 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 7474.00 18.85 5.57 66.84 SNHG14-288 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 25241.00 63.65 18.81 92.5 SNHG14-288 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 250.00 7.79 0.19 100.0 SNHG14-295 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 450.00 72.82 0.34 100.0 MEG8-240 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 8970.00 29.18 6.69 100.0 SNHG14-303 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 161.00 1.21 0.12 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_59_82_+ 59–82 40.00 0.30 0.03 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 10238.00 77.02 7.63 99.66 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 38.00 0.29 0.03 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 1095.00 8.12 0.82 100.0 ENST00000666735 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 542.00 4.02 0.40 100.0 ENST00000666735 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 1300.00 68.75 0.97 100.0 MEG8-242 lncRNA smooth muscle cell (In vitro differentiated cells)