ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 132.00 0.34 0.10 100.0 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1211.00 3.15 0.90 29.75 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 961.13 2.50 0.72 40.86 RNA5-8SN2-201 rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 25.00 96.15 0.02 100.0 MIR7974-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 2.00 33.33 0.00 100.0 MIR376A1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1259.00 0.95 0.94 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 6760.47 5.09 5.04 44.82 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 20055.00 15.10 14.95 99.9 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 13.00 0.01 0.01 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 177.00 0.13 0.13 72.84 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 670.00 0.50 0.50 55.46 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 1352.00 1.02 1.01 96.85 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 10266.58 7.73 7.65 68.06 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 2276.00 1.71 1.70 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 1071.00 0.81 0.80 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 10.00 0.01 0.01 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 8186.00 6.16 6.10 100.0 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 80.84 0.06 0.06 45.16 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 100.14 0.08 0.07 49.57 U2.3-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1542.00 1.44 1.15 100.0 U2.6-201 snRNA smooth muscle cell (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 216.00 48.65 0.16 100.0 ENST00000619323 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 733.00 23.80 0.55 100.0 SCARNA4-202 scaRNA smooth muscle cell (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 3198.00 35.82 2.38 100.0 ENST00000625572 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 42273.00 94.97 31.51 100.0 ENST00000628177 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 23019.00 92.30 17.16 100.0 ENST00000630615 snoRNA smooth muscle cell (In vitro differentiated cells)