ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 89398.11 35.11 66.63 57.94 RPL17-214 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 185.00 0.01 0.14 100.0 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 29.00 0.00 0.02 100.0 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 2228807.00 99.49 1661.24 99.92 SNORD43-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 269.00 57.11 0.20 100.0 MIR151B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 778.00 1.29 0.58 100.0 SNORD3A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 45556.00 89.24 33.96 100.0 SNORD92-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 8034.00 42.22 5.99 100.0 NSRP1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 9120.00 47.93 6.80 94.53 NSRP1-214 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 4111.00 7.83 3.06 85.24 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 21273.00 40.52 15.86 100.0 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 7033.00 13.40 5.24 88.7 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 4812.00 9.17 3.59 92.22 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1381.00 2.63 1.03 63.76 MIR23AHG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 927.00 70.17 0.69 100.0 ODAD3-204 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 8227.00 3.18 6.13 100.0 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 911.00 0.35 0.68 100.0 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 191213.00 73.85 142.52 79.4 VMP1-217 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 923.00 0.04 0.69 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1804956.08 72.71 1345.32 75.09 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 592963.20 23.89 441.96 24.27 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 17908.00 0.72 13.35 92.25 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 261.00 0.01 0.19 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 43.00 0.00 0.03 100.0 C19orf48P-203 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 190.00 71.70 0.14 100.0 ENST00000597420 lncRNA smooth muscle cell (In vitro differentiated cells)