ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 806.00 0.17 0.60 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 55687.00 84.51 41.51 90.45 MIR3142HG-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 20090.00 87.45 14.97 100.0 SNHG6-204 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 20190.00 28.20 15.05 100.0 MIR151A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 42927.00 59.95 32.00 85.88 MIR151A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 12764.00 99.13 9.51 100.0 DENND3-221 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 850.00 0.82 0.63 84.75 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 260.00 0.25 0.19 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 223.00 0.21 0.17 63.35 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3460.00 3.32 2.58 79.5 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 129.00 0.12 0.10 36.65 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 5541.00 5.31 4.13 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 275.00 0.26 0.20 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 729.00 0.70 0.54 100.0 WDR74-204 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 36717.00 78.31 27.37 100.0 HSPA8-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 699.00 24.03 0.52 100.0 SCARNA9-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 465314.00 96.06 346.82 100.0 TAF1D-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 2671.00 0.55 1.99 100.0 TAF1D-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 50.00 0.12 0.04 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 30987.00 75.89 23.10 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 198.00 0.48 0.15 100.0 HSPA8-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1784.00 29.78 1.33 100.0 RPS2-215 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 392663.00 80.32 292.67 80.98 ENST00000548801 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 3654.00 11.39 2.72 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 185.00 0.58 0.14 100.0 ENST00000554988 lncRNA smooth muscle cell (In vitro differentiated cells)