ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 2119.00 0.34 1.58 100.0 RPL13-207 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2487.00 0.17 1.85 50.46 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 14790.00 1.04 11.02 67.91 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 1182.00 0.08 0.88 35.48 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 9608.00 0.67 7.16 68.39 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 5685.00 0.40 4.24 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 5026.00 0.35 3.75 72.98 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 2991.00 0.21 2.23 75.53 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 5612.00 0.39 4.18 90.01 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 190525.00 13.34 142.01 77.25 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 634.00 0.04 0.47 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 1138196.00 79.70 848.35 99.01 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 5620.00 0.39 4.19 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2337.00 0.16 1.74 46.64 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 24.00 0.00 0.02 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 976.00 0.07 0.73 100.0 EIF4A2-219 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 126647.00 97.68 94.40 100.0 RPS8-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 439.00 7.08 0.33 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 911.00 14.69 0.68 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 2155.00 34.75 1.61 100.0 RPL7A-206 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1595603.00 84.76 1189.28 98.64 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 64.00 0.00 0.05 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4804.00 0.26 3.58 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1553.00 0.08 1.16 100.0 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 271112.00 14.40 202.07 98.96 RPL21-209 retained intron smooth muscle cell (In vitro differentiated cells)