ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 114.00 0.09 0.56 83.82 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 216.53 0.16 1.06 40.63 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 338.00 0.26 1.65 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 79.00 0.06 0.39 58.96 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 170.00 0.13 0.83 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 7.00 0.01 0.03 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 14.00 0.01 0.07 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 854.00 25.90 4.17 100.0 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 978.00 29.66 4.78 94.22 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 861.00 26.11 4.20 86.88 SNHG14-315 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 123.00 0.10 0.60 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 37761.85 29.81 184.41 35.47 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 14.00 0.01 0.07 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 108.00 0.09 0.53 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 83188.23 65.67 406.25 69.87 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 2847.00 2.25 13.90 88.39 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 15.00 0.01 0.07 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 368.00 0.29 1.80 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 62.00 0.05 0.30 100.0 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 921.00 0.73 4.50 99.14 SNHG5-273 lncRNA transverse colon (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 9.00 1.19 0.04 90.0 SNHG14-323 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 42420.00 94.69 207.16 97.94 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 207.00 0.46 1.01 66.56 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 146.00 0.33 0.71 42.69 MEG8-251 lncRNA transverse colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 280.00 0.63 1.37 83.09 MEG8-251 lncRNA transverse colon (Tissue)