ENCFF211GIU

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR183YQY
Description: Part of ENCODE experiment ENCSR183YQY. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 356.00 10.54 1.74 67.68 RPL3-212 retained intron transverse colon (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3373.00 96.26 16.47 100.0 SMC1A-204 retained intron transverse colon (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 9660.00 80.29 47.17 99.11 RABGGTB-208 protein coding CDS not defined transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 316.00 30.15 1.54 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 201.00 19.18 0.98 85.17 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 110.00 10.50 0.54 100.0 DDX39B-219 retained intron transverse colon (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1064.00 64.29 5.20 100.0 RPS8-206 protein coding CDS not defined transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 20067.00 94.19 98.00 99.83 RPL13-207 retained intron transverse colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 416.00 1.95 2.03 100.0 RPL13-207 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 85361.00 67.59 416.86 98.04 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 264.00 0.21 1.29 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 533.00 0.42 2.60 70.22 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 143.00 0.11 0.70 57.43 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 803.00 0.64 3.92 89.92 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 30253.00 23.95 147.74 82.49 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 52.00 0.04 0.25 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 183.00 0.14 0.89 44.96 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 285.00 0.23 1.39 42.22 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 211.00 0.17 1.03 40.04 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 307.00 0.24 1.50 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 1603.00 1.27 7.83 60.58 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 582.00 0.46 2.84 100.0 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 107.00 0.08 0.52 34.29 EIF4A2-219 retained intron transverse colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 4748.00 93.19 23.19 100.0 RPS8-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 125.00 12.85 0.61 100.0 RPL7A-206 protein coding CDS not defined transverse colon (Tissue)