ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1741.00 39.86 8.67 100.0 HSPA9-211 retained intron testis (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 658.00 15.06 3.28 47.07 HSPA9-211 retained intron testis (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 1487.00 36.29 7.41 100.0 DNM3OS-205 lncRNA testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 2089.00 0.17 10.41 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 75.00 0.01 0.37 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1692.00 0.14 8.43 78.84 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 11.00 0.00 0.05 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 239.00 0.02 1.19 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 787.00 0.06 3.92 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 914665.00 74.09 4555.88 99.87 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 246.00 0.02 1.23 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 1813.00 0.15 9.03 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 715.00 0.06 3.56 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 227.00 0.02 1.13 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3123.00 0.25 15.56 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 9.00 0.00 0.04 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 273.00 0.02 1.36 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1098.00 0.09 5.47 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 5009.00 0.41 24.95 78.5 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 2034.00 0.16 10.13 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 137.00 0.01 0.68 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 56.00 0.00 0.28 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2032.00 0.16 10.12 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 283247.00 22.94 1410.83 100.0 GAS5-230 retained intron testis (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 41.00 21.81 0.20 100.0 FTX-219 lncRNA testis (Tissue)