ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 5.00 1.63 0.02 4.81 MIR142HG-201 lncRNA testis (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 3346.25 0.14 16.67 65.7 RPL23A-208 retained intron testis (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 1644.69 0.07 8.19 43.61 RPL23A-208 retained intron testis (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 2067787.00 87.15 10299.50 92.2 RPL23A-208 retained intron testis (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 290841.00 12.26 1448.66 92.17 RPL23A-208 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 34094.00 24.92 169.82 83.66 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 44021.00 32.18 219.27 85.67 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 296.00 0.22 1.47 100.0 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 31535.00 23.05 157.07 89.7 RPL17-211 retained intron testis (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 22528.00 16.47 112.21 87.44 RPL17-211 retained intron testis (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 4.00 40.00 0.02 40.0 ENST00000582320 lncRNA testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 16901.00 16.84 84.18 100.0 RPL17-214 retained intron testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 56428.42 56.24 281.07 72.15 RPL17-214 retained intron testis (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 18622.52 18.56 92.76 23.55 RPL17-214 retained intron testis (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 326641.00 98.57 1626.98 99.95 SNORD43-201 snoRNA testis (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 51.00 0.02 0.25 100.0 SNORD43-201 snoRNA testis (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 53.00 37.86 0.26 100.0 MIR151B-201 miRNA testis (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 150.00 2.84 0.75 100.0 SNORD3A-201 snoRNA testis (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1294.00 36.31 6.45 100.0 NSRP1-214 protein coding testis (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1693.00 47.50 8.43 86.16 NSRP1-214 protein coding testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 341.00 38.06 1.70 96.33 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 142.00 15.85 0.71 94.04 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 175.00 19.53 0.87 91.15 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 70.00 7.81 0.35 85.37 MIR23AHG-201 lncRNA testis (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 5.00 13.89 0.02 100.0 ODAD3-204 nonsense mediated decay testis (Tissue)