ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 8241.00 18.07 41.05 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1304.00 2.86 6.50 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 9.00 0.04 0.04 100.0 ENST00000563103 lncRNA testis (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3022.00 63.50 15.05 100.0 RPL4-207 retained intron testis (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 383.00 8.05 1.91 100.0 RPL4-207 retained intron testis (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 13842.00 93.58 68.95 98.23 ENST00000565336 lncRNA testis (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 222.00 1.50 1.11 63.98 ENST00000565336 lncRNA testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1618.00 18.48 8.06 100.0 RBMX-210 retained intron testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3195.00 36.49 15.91 100.0 RBMX-210 retained intron testis (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 30.00 0.34 0.15 3.61 RBMX-210 retained intron testis (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 142.00 10.26 0.71 100.0 RPL4-214 retained intron testis (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 46.00 0.81 0.23 100.0 POLG-DT-202 lncRNA testis (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 999.00 17.69 4.98 23.74 POLG-DT-202 lncRNA testis (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 3317.47 58.74 16.52 80.78 POLG-DT-202 lncRNA testis (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 508.00 22.40 2.53 100.0 ENST00000570843 lncRNA testis (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 600.00 69.61 2.99 100.0 MIR497HG-207 lncRNA testis (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 8589.00 96.41 42.78 97.48 MIR22HG-212 lncRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 268.00 48.82 1.33 56.9 SNORD53B-201 snoRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 1.00 0.18 0.00 100.0 SNORD53B-201 snoRNA testis (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 203.00 36.98 1.01 43.1 SNORD53B-201 snoRNA testis (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 86.00 71.67 0.43 100.0 ENST00000578036 lncRNA testis (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 290.00 77.13 1.44 100.0 RPL23A-207 protein coding testis (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 179.00 91.79 0.89 100.0 MIR744-201 miRNA testis (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 4.00 66.67 0.02 100.0 MIR378C-201 miRNA testis (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 209.00 68.30 1.04 73.59 MIR142HG-201 lncRNA testis (Tissue)