ENCFF195CBI

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR626GVP
Description: Part of ENCODE experiment ENCSR626GVP. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 61.00 0.14 0.30 62.89 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 791.00 1.76 3.94 36.18 RNY4-201 misc RNA testis (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 195.00 75.88 0.97 81.25 MIR3142HG-201 lncRNA testis (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 1960.00 12.40 9.76 100.0 MIR151A-201 miRNA testis (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 11589.00 73.34 57.72 85.75 MIR151A-201 miRNA testis (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 1568.00 99.75 7.81 100.0 DENND3-221 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 2599.00 5.42 12.95 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 8025.00 16.74 39.97 73.25 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 2940.00 6.13 14.64 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 1324.00 2.76 6.59 60.65 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 859.00 1.79 4.28 39.35 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 108.00 0.23 0.54 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 980.00 34.39 4.88 100.0 SCARNA9-201 lncRNA testis (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 26770.00 96.34 133.34 100.0 TAF1D-215 retained intron testis (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 8027.00 73.47 39.98 77.8 ENST00000548801 lncRNA testis (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 797.00 15.34 3.97 100.0 ENST00000554988 lncRNA testis (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1274.00 24.51 6.35 100.0 ENST00000554988 lncRNA testis (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 103.00 0.26 0.51 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1194.00 3.00 5.95 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 36636.00 91.98 182.48 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 161.00 0.40 0.80 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 389.00 99.23 1.94 100.0 TEKT4P2-201 transcribed unprocessed pseudogene testis (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 4.00 0.01 0.02 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 894.00 1.96 4.45 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 30617.00 67.12 152.50 92.19 RPL4-202 retained intron testis (Tissue)