ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 63541.00 75.31 52.41 91.03 SNHG14-288 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 28.00 23.73 0.02 100.0 SNHG14-295 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 123.00 63.73 0.10 100.0 MEG8-240 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 17026.00 47.83 14.04 100.0 SNHG14-303 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 423.00 80.88 0.35 100.0 SNHG14-306 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 5.00 0.96 0.00 100.0 SNHG14-306 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 2142.00 11.25 1.77 100.0 ENST00000666735 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 2321.00 12.19 1.91 100.0 ENST00000666735 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 162.00 31.46 0.13 100.0 MEG8-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 12663.99 13.16 10.44 14.29 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 75510.46 78.44 62.28 85.2 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 545.00 0.57 0.45 100.0 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 9.00 0.75 0.01 100.0 MEG8-244 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 872.00 72.43 0.72 87.73 MEG8-244 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 123.00 0.00 0.10 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 159.00 0.00 0.13 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 4962.00 0.05 4.09 94.75 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 644.39 0.01 0.53 62.26 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3348.00 0.03 2.76 87.12 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 4812114.00 50.25 3968.85 96.05 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 195.00 0.00 0.16 55.56 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 160786.00 1.68 132.61 99.86 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 4409.00 0.05 3.64 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 1963755.00 20.51 1619.63 99.37 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 4303.00 0.04 3.55 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)