ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 16.00 3.07 0.01 76.19 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 24.00 4.60 0.02 80.0 MIR23AHG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 172.00 64.66 0.14 100.0 ODAD3-204 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 3.00 0.26 0.00 100.0 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 15.00 1.32 0.01 100.0 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 893.00 78.75 0.74 83.3 VMP1-217 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 2201.00 0.08 1.82 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 924324.64 33.89 762.35 41.15 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1682289.53 61.68 1387.49 64.92 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 106668.00 3.91 87.98 93.3 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 1515.00 0.06 1.25 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 20.00 0.00 0.02 100.0 C19orf48P-203 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 367.00 79.61 0.30 100.0 ENST00000597420 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 1876.00 45.43 1.55 100.0 RPS11-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1524.00 36.91 1.26 100.0 RPS11-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 6.00 30.00 0.00 60.0 CARMN-209 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3963.00 51.44 3.27 100.0 ENST00000602478 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 30.00 18.75 0.02 100.0 PPFIA1P1-201 processed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 220.00 42.47 0.18 100.0 SNORD114-21-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 37.00 7.14 0.03 100.0 SNORD114-21-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 180.00 74.38 0.15 100.0 SNORD115-40-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2.00 15.38 0.00 100.0 MIR98-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 315.00 67.02 0.26 100.0 SNORD113-5-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 18.00 60.00 0.01 100.0 MIR15A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 3.00 100.00 0.00 100.0 MIR376C-201 miRNA neural progenitor cell (In vitro differentiated cells)