ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 40748.00 91.72 33.61 100.0 RPL4-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 319.00 0.72 0.26 100.0 RPL4-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 2097.00 43.18 1.73 93.24 ENST00000565336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 883.00 18.18 0.73 66.94 ENST00000565336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1487.00 0.24 1.23 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 4242.00 0.67 3.50 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1366.00 0.22 1.13 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 603758.00 95.95 497.96 99.7 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 8640.00 73.32 7.13 100.0 RPL4-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1248.00 10.59 1.03 100.0 RPL4-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1408.76 23.06 1.16 51.98 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 1401.90 22.95 1.16 65.45 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 67.00 1.10 0.06 100.0 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2.00 0.09 0.00 100.0 ENST00000570843 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 1.00 0.04 0.00 100.0 ENST00000570843 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 286.00 12.51 0.24 100.0 ENST00000570843 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 19.00 67.86 0.02 100.0 MIR497HG-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 1027.00 96.98 0.85 99.32 MIR22HG-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 393.00 0.87 0.32 86.75 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 60.00 0.13 0.05 13.25 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 27836.00 61.96 22.96 63.24 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 26.00 74.29 0.02 100.0 ENST00000578036 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 14691.00 94.53 12.12 100.0 RPL23A-207 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 894.00 94.70 0.74 100.0 MIR744-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 5.00 45.45 0.00 100.0 MIR378C-201 miRNA neural progenitor cell (In vitro differentiated cells)