ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 4143.44 25.74 15.75 59.17 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 4671.00 94.75 17.76 96.39 MIR146B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 24.00 46.15 0.09 100.0 SNHG20-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 14.00 12.50 0.05 100.0 ATP5MK-205 protein coding gastroesophageal sphincter (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 627.00 45.67 2.38 100.0 ATAD3A-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 22.00 16.30 0.08 70.97 TMC5-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 5.00 50.00 0.02 100.0 ZMYM2-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 50.00 2.30 0.19 100.0 RNVU1-7-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 636.00 54.27 2.42 100.0 SNORD24-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 250.00 45.87 0.95 100.0 Y_RNA.389-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 602.00 1.66 2.29 94.36 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 26115.00 71.87 99.30 98.71 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 1184.00 3.26 4.50 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 255.00 0.70 0.97 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 11725.00 94.82 44.58 100.0 SNORD37-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 317851.00 93.78 1208.57 99.38 SNORD59A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 78.00 28.47 0.30 100.0 SNORA7B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 62.00 65.96 0.24 100.0 SNORD14D-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 14.00 5.00 0.05 100.0 Y_RNA.555-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 1737.00 90.99 6.60 92.54 MIR25-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 43756.00 96.95 166.37 99.53 MIR99B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 5464.00 31.42 20.78 76.55 MIR23B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 11322.00 65.11 43.05 86.9 MIR23B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 181.00 6.06 0.69 100.0 MIR199B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 2534.00 84.86 9.64 92.72 MIR199B-201 miRNA gastroesophageal sphincter (Tissue)