ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 14.00 22.22 0.05 100.0 RPSA-216 retained intron gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 578.00 5.85 2.20 79.61 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 8695.00 87.97 33.06 97.55 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 27.00 96.43 0.10 100.0 HPS4-237 retained intron gastroesophageal sphincter (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 15.00 100.00 0.06 100.0 MEG8-253 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 1.95 0.01 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 7.00 4.55 0.03 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 61.00 39.61 0.23 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 202.00 13.59 0.77 100.0 DNAJC5-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 301.00 14.11 1.14 100.0 ENST00000707189 TEC gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 15825.93 40.86 60.18 43.51 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 48.00 0.12 0.18 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 5.00 0.01 0.02 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 22702.13 58.61 86.32 60.4 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 69.00 0.18 0.26 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 46.00 0.12 0.17 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 55.00 0.14 0.21 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 24.00 0.06 0.09 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 3537.00 6.92 13.45 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 173.00 0.34 0.66 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 42.00 0.08 0.16 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 402.00 0.79 1.53 75.28 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 46000.00 90.02 174.91 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 13822.00 90.35 52.56 99.25 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 482.00 3.15 1.83 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)