ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 89.00 0.02 0.34 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 108.00 0.02 0.41 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 19284.00 3.26 73.32 80.86 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 53334.00 9.02 202.79 98.76 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 65.00 0.01 0.25 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 119.00 0.02 0.45 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 9618.00 1.63 36.57 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1979.00 0.33 7.52 82.39 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 225.04 0.04 0.86 29.19 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 383.00 0.06 1.46 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1803.00 0.31 6.86 65.95 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 169.00 0.03 0.64 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 2023.00 0.34 7.69 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 9.00 0.00 0.03 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 21294.00 29.98 80.97 100.0 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 23151.00 32.60 88.03 90.57 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 15437.00 21.74 58.70 78.24 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 397.00 0.25 1.51 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 79563.04 50.70 302.52 58.37 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 167.00 0.11 0.63 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 125.00 0.08 0.48 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 67122.58 42.78 255.22 46.18 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 2219.00 1.41 8.44 90.72 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 132.00 0.08 0.50 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 414.00 0.26 1.57 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)