ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 476.00 1.82 1.81 69.79 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2773.80 9.18 10.55 46.28 5S_rRNA.20-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 15.00 1.11 0.06 100.0 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 321.00 23.74 1.22 42.24 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2175.00 72.26 8.27 100.0 DNM3OS-205 lncRNA gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 2998.00 2.20 11.40 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 254.00 0.19 0.97 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 85.00 0.06 0.32 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 67.00 0.05 0.25 93.06 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1191.00 0.87 4.53 85.99 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 7.00 0.01 0.03 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 42.00 0.03 0.16 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 65.00 0.05 0.25 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 83528.00 61.25 317.60 99.84 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 68.00 0.05 0.26 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2199.00 1.61 8.36 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 317.00 0.23 1.21 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 45.00 0.03 0.17 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 245.00 0.18 0.93 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 590.00 0.43 2.24 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 107.00 0.08 0.41 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 2264.00 1.66 8.61 83.91 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1923.00 1.41 7.31 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1381.00 1.01 5.25 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1143.00 0.84 4.35 80.72 GAS5-230 retained intron gastroesophageal sphincter (Tissue)