ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 339.00 78.11 1.29 100.0 SNORD113-5-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 71.00 57.72 0.27 100.0 MIR15A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 91.00 55.83 0.35 100.0 SNHG21-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 376.00 89.10 1.43 100.0 SNORD11B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1271.00 62.70 4.83 100.0 SNORD91B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 2696.00 48.72 10.25 65.03 SNORD91A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 22886.00 47.87 87.02 96.93 MIR486-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 13448.00 49.88 51.13 56.02 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 32.00 0.12 0.12 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 192.00 0.71 0.73 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 961.00 3.56 3.65 76.09 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 222.00 2.54 0.84 50.92 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2455.21 28.11 9.34 44.46 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 10.00 0.11 0.04 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 704.00 8.06 2.68 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 337.00 3.86 1.28 60.29 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 3146.22 36.02 11.96 56.98 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 372.00 2.63 1.41 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 295.39 2.09 1.12 31.13 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 33.00 0.23 0.13 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 5.00 0.04 0.02 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 9.00 0.06 0.03 40.91 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 3.00 0.02 0.01 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 679.26 4.80 2.58 71.58 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 1086.00 7.67 4.13 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)