ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 128.00 1.29 0.49 100.0 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 328.00 5.23 1.25 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 238.00 3.79 0.90 100.0 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 4781.00 76.20 18.18 94.6 SNORD12B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 117.00 8.22 0.44 100.0 Y_RNA.609-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 24.00 27.27 0.09 100.0 Y_RNA.612-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 173795.00 97.92 660.82 99.85 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 49.00 0.03 0.19 100.0 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 1097.00 0.62 4.17 100.0 SNORD71-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1409.00 82.59 5.36 90.38 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 288.00 16.88 1.10 50.88 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 217.00 0.69 0.83 100.0 LINC01783-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 516.00 16.25 1.96 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 333.00 10.49 1.27 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 625.00 19.69 2.38 96.01 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 64.00 2.02 0.24 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 17.00 0.54 0.06 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 4.00 23.53 0.02 100.0 MRPL32-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 14.00 93.33 0.05 100.0 ENST00000436739 lncRNA gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 93.00 5.00 0.35 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 742.00 39.87 2.82 79.78 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 2.00 0.11 0.01 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 46.00 2.47 0.17 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 83.00 4.46 0.32 86.46 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 542.00 77.54 2.06 98.37 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)