ENCFF000JGN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3100.00 36.94 291.76 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 620.00 1.63 58.35 100.0 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 8521.00 22.45 801.97 81.01 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 22833.00 60.16 2148.97 93.51 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 450.00 75.13 42.35 100.0 SNHG14-336 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 692.00 67.25 65.13 100.0 NCL-216 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 10991.69 56.30 1034.51 74.64 SNHG19-202 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3868.94 19.82 364.13 29.08 SNHG19-202 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 353.00 45.20 33.22 100.0 SNHG8-214 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 3899.00 90.82 366.96 100.0 ENST00000722183 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 11951.00 86.36 1124.79 100.0 ENST00000747512 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 8232.00 92.02 774.77 100.0 ENST00000772672 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 8.00 2.82 0.75 100.0 ENST00000788343 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 3.00 0.07 0.28 100.0 ENST00000823279 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 60.00 1.38 5.65 7.23 ENST00000823279 lncRNA articular chondrocyte of knee joint (Primary cell)