ENCFF158HXL

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR603XUX
Description: Part of ENCODE experiment ENCSR603XUX. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 12.00 3.63 0.10 100.0 ODAD3-204 nonsense mediated decay right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 6009.00 4.13 51.46 100.0 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 692.00 0.48 5.93 100.0 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 106168.00 73.01 909.27 80.25 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1804.00 44.39 15.45 100.0 C19orf48P-203 retained intron right lobe of liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 238.00 5.86 2.04 100.0 C19orf48P-203 retained intron right lobe of liver (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 339850.00 79.29 2910.62 80.72 CARMN-209 lncRNA right lobe of liver (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 7772.00 49.34 66.56 100.0 PPFIA1P1-201 processed pseudogene right lobe of liver (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 393.00 52.54 3.37 100.0 SNORD114-21-201 snoRNA right lobe of liver (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 234.00 31.28 2.00 100.0 SNORD114-21-201 snoRNA right lobe of liver (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 4943.00 95.31 42.33 100.0 MIR98-201 miRNA right lobe of liver (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 88.00 62.86 0.75 100.0 SNORD113-5-201 snoRNA right lobe of liver (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 195.00 93.30 1.67 100.0 MIR15A-201 miRNA right lobe of liver (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 451.00 62.64 3.86 100.0 SNHG21-206 retained intron right lobe of liver (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 5505.00 47.74 47.15 96.94 MIR486-1-201 miRNA right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 4470.00 43.90 38.28 100.0 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 315.00 3.09 2.70 100.0 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 857.00 8.42 7.34 100.0 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1357.00 13.33 11.62 40.8 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 6106.43 39.57 52.30 58.42 RNA5-8SN2-201 rRNA right lobe of liver (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 718.00 4.65 6.15 100.0 RNA5-8SN2-201 rRNA right lobe of liver (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 7.00 0.05 0.06 100.0 RNA5-8SN2-201 rRNA right lobe of liver (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 4463.80 28.93 38.23 42.7 RNA5-8SN2-201 rRNA right lobe of liver (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 4.00 33.33 0.03 100.0 MIR7974-201 miRNA right lobe of liver (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 306.00 1.06 2.62 100.0 U2.3-201 snRNA right lobe of liver (Tissue)