ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2578.00 71.93 11.54 100.0 HSPA8-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 54.00 10.55 0.24 100.0 SCARNA9-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 86.00 0.50 0.38 100.0 TAF1D-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 16159.00 93.90 72.31 100.0 TAF1D-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 1.00 0.14 0.00 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 575.00 82.50 2.57 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 6.00 0.86 0.03 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 11.00 4.07 0.05 100.0 RPS2-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 342284.00 79.68 1531.73 81.33 ENST00000548801 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 75.00 6.04 0.34 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 265.00 21.35 1.19 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 193.00 15.55 0.86 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 463.00 2.02 2.07 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 121.00 0.53 0.54 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 5621.00 24.47 25.15 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 15820.00 68.86 70.80 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 483.00 96.41 2.16 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 224.00 1.02 1.00 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 3.00 0.01 0.01 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 7.00 0.03 0.03 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 808.00 3.67 3.62 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 16226.00 73.76 72.61 93.99 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 3.00 0.00 0.01 100.0 ENST00000563103 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 1843.00 31.73 8.25 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1551.00 26.70 6.94 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)