ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 70.00 2.35 0.13 25.83 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 500.00 16.78 0.91 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 277.00 9.30 0.51 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 147.00 4.93 0.27 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 201.00 6.74 0.37 74.17 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 160.00 24.06 0.29 100.0 SNHG10-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 48866.75 46.47 89.20 47.43 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 54426.51 51.76 99.35 65.01 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 8.39 0.01 0.02 93.24 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.00 72.05 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 6289.00 64.60 11.48 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1968.00 20.22 3.59 83.92 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 124.00 1.27 0.23 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 11.00 4.35 0.02 100.0 RPSA-216 retained intron esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 704.00 3.59 1.29 71.69 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 18027.00 91.89 32.91 97.73 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 383.00 93.41 0.70 100.0 HPS4-237 retained intron esophagus squamous epithelium (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 52.00 86.67 0.09 100.0 MEG8-253 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 1.00 0.54 0.00 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 7.00 3.78 0.01 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 55.00 29.73 0.10 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1387.00 12.83 2.53 100.0 DNAJC5-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 185.00 12.53 0.34 100.0 ENST00000707189 TEC esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 6250.00 4.68 11.41 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 42580.81 31.90 77.73 36.37 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)