ENCFF076JME

Library Details

Organism: Homo Sapiens
Biosample: ovary (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR024CRN
Description: Part of ENCODE experiment ENCSR024CRN. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's female gonad tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 2422.00 3.39 10.66 68.89 WDR74-204 protein coding ovary (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 1280.00 1.79 5.64 100.0 WDR74-204 protein coding ovary (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 223.00 0.31 0.98 100.0 WDR74-204 protein coding ovary (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1312.00 1.83 5.78 100.0 WDR74-204 protein coding ovary (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1321.00 76.31 5.82 100.0 HSPA8-211 retained intron ovary (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 293.00 17.51 1.29 100.0 SCARNA9-201 lncRNA ovary (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 23346.00 92.24 102.79 100.0 TAF1D-215 retained intron ovary (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 141.00 0.56 0.62 100.0 TAF1D-215 retained intron ovary (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 9.00 0.48 0.04 100.0 HSPA8-215 retained intron ovary (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 1679.00 88.65 7.39 100.0 HSPA8-215 retained intron ovary (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 12.00 0.63 0.05 100.0 HSPA8-215 retained intron ovary (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 123.00 16.76 0.54 100.0 RPS2-215 retained intron ovary (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 60952.00 75.59 268.35 78.95 ENST00000548801 lncRNA ovary (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1350.00 33.21 5.94 100.0 ENST00000554988 lncRNA ovary (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 338.00 8.31 1.49 100.0 ENST00000554988 lncRNA ovary (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 585.00 14.39 2.58 100.0 ENST00000554988 lncRNA ovary (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 80284.00 82.22 353.47 100.0 SNHG14-220 retained intron ovary (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 11483.00 11.76 50.56 100.0 SNHG14-220 retained intron ovary (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1636.00 1.68 7.20 100.0 SNHG14-220 retained intron ovary (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 505.00 0.52 2.22 100.0 SNHG14-220 retained intron ovary (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1601.00 98.10 7.05 100.0 TEKT4P2-201 transcribed unprocessed pseudogene ovary (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 594.00 2.51 2.62 100.0 RPL4-202 retained intron ovary (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1.00 0.00 0.00 100.0 RPL4-202 retained intron ovary (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 609.00 2.58 2.68 100.0 RPL4-202 retained intron ovary (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 18939.00 80.17 83.38 92.54 RPL4-202 retained intron ovary (Tissue)