ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 2.00 0.74 0.01 100.0 RNU5E-1-201 snRNA transverse colon (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 48.00 0.81 0.23 11.4 RNA5SP370-201 rRNA pseudogene transverse colon (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 1226.00 49.46 5.88 100.0 SNORA31-201 snoRNA transverse colon (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 172.00 2.91 0.82 63.24 RNA5SP389-201 rRNA pseudogene transverse colon (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 829.00 14.02 3.97 100.0 RNA5SP389-201 rRNA pseudogene transverse colon (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 24.00 0.41 0.12 100.0 RNA5SP389-201 rRNA pseudogene transverse colon (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 180.00 3.04 0.86 32.09 RNA5SP389-201 rRNA pseudogene transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 549.00 1.39 2.63 100.0 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 5142.00 13.04 24.65 74.42 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 2770.00 7.02 13.28 70.65 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 5545.00 14.06 26.58 81.35 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 1554.00 3.94 7.45 68.37 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 529.00 1.34 2.54 100.0 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 5431.00 13.77 26.04 85.53 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 1707.00 4.33 8.18 49.45 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 919.25 2.33 4.41 61.94 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 1835.00 4.65 8.80 68.06 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 1.00 0.00 0.00 100.0 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 516.07 1.31 2.47 43.48 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 847.76 2.15 4.06 72.52 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 816.95 2.07 3.92 41.22 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1618.00 4.10 7.76 25.77 RNU5A-1-201 snRNA transverse colon (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 250.00 79.11 1.20 100.0 SNORD114-14-201 snoRNA transverse colon (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1304.00 5.96 6.25 100.0 SNORD104-201 snoRNA transverse colon (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 33.00 0.15 0.16 100.0 SNORD104-201 snoRNA transverse colon (Tissue)