ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 4309.00 31.23 20.66 100.0 MT-RNR1-201 Mt rRNA transverse colon (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 213.00 1.54 1.02 100.0 MT-RNR1-201 Mt rRNA transverse colon (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 62.00 77.50 0.30 100.0 MIR454-201 miRNA transverse colon (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 59.00 58.42 0.28 100.0 MIR501-201 miRNA transverse colon (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 345.00 89.38 1.65 100.0 MIR769-201 miRNA transverse colon (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 170.00 60.71 0.82 100.0 KRTAP19-1-201 protein coding transverse colon (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 12.00 70.59 0.06 100.0 MIR509-3-201 miRNA transverse colon (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 8.00 100.00 0.04 100.0 MIR301B-201 miRNA transverse colon (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 307.00 48.42 1.47 76.94 RNU1-82P-201 snRNA transverse colon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3128.00 19.56 15.00 100.0 SNORD66-201 snoRNA transverse colon (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 2114.00 13.22 10.14 100.0 SNORD66-201 snoRNA transverse colon (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 3533.00 22.10 16.94 72.88 SNORD66-201 snoRNA transverse colon (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 509.00 3.18 2.44 100.0 SNORD66-201 snoRNA transverse colon (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 4.00 16.67 0.02 100.0 U3.17-201 snoRNA transverse colon (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 3477.00 85.03 16.67 100.0 SNORD17-201 snoRNA transverse colon (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1020.00 68.55 4.89 100.0 SNORD72-201 snoRNA transverse colon (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1668.00 78.35 8.00 100.0 SNORD70B-201 snoRNA transverse colon (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 6408.00 77.49 30.72 92.69 RNY4P18-201 misc RNA transverse colon (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 41058.00 84.23 196.84 100.0 SNORD90-201 snoRNA transverse colon (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 5682.00 11.66 27.24 64.49 SNORD90-201 snoRNA transverse colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 35881.00 79.40 172.02 100.0 SNORD69-201 snoRNA transverse colon (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3626.00 8.02 17.38 100.0 SNORD69-201 snoRNA transverse colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2291.00 5.07 10.98 100.0 SNORD69-201 snoRNA transverse colon (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 931.00 2.06 4.46 100.0 SNORD69-201 snoRNA transverse colon (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 3506.00 62.54 16.81 69.51 SNORD70-201 snoRNA transverse colon (Tissue)