ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 764.00 1.19 3.66 82.42 MIR28-201 miRNA transverse colon (Tissue)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 401.00 0.63 1.92 100.0 MIR28-201 miRNA transverse colon (Tissue)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 57638.00 90.11 276.33 92.76 MIR28-201 miRNA transverse colon (Tissue)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 205.00 71.93 0.98 100.0 MIR183-201 miRNA transverse colon (Tissue)
ENST00000384967.1 ENST00000384967.1_56_76_+ 56–76 132.00 6.70 0.63 100.0 MIR145-201 miRNA transverse colon (Tissue)
ENST00000384967.1 ENST00000384967.1_16_38_+ 16–38 1590.00 80.67 7.62 100.0 MIR145-201 miRNA transverse colon (Tissue)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 6120.00 96.87 29.34 97.98 MIR186-201 miRNA transverse colon (Tissue)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 8960.00 90.21 42.96 100.0 MIR200B-201 miRNA transverse colon (Tissue)
ENST00000384999.1 ENST00000384999.1_25_46_+ 25–46 12.00 35.29 0.06 100.0 MIR218-1-201 miRNA transverse colon (Tissue)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 4932.00 93.66 23.65 96.57 MIR181B2-201 miRNA transverse colon (Tissue)
ENST00000385010.3 ENST00000385010.3_50_71_+ 50–71 1.00 100.00 0.00 100.0 MIR495-201 miRNA transverse colon (Tissue)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 842503.00 86.56 4039.20 87.05 MIR10B-201 miRNA transverse colon (Tissue)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 149.19 52.35 0.72 59.2 MIR130B-201 miRNA transverse colon (Tissue)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 73.27 25.71 0.35 43.88 MIR130B-201 miRNA transverse colon (Tissue)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 19.00 6.67 0.09 100.0 MIR130B-201 miRNA transverse colon (Tissue)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 1712.00 27.45 8.21 100.0 MIR199A1-201 miRNA transverse colon (Tissue)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 6.00 66.67 0.03 100.0 MIR487B-201 miRNA transverse colon (Tissue)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 218.63 24.54 1.05 34.65 MIR93-201 miRNA transverse colon (Tissue)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 596.27 66.92 2.86 70.23 MIR93-201 miRNA transverse colon (Tissue)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 446.00 80.22 2.14 95.1 MIR532-201 miRNA transverse colon (Tissue)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 49.00 74.24 0.23 100.0 MIR15B-201 miRNA transverse colon (Tissue)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 615.00 77.16 2.95 100.0 MIR150-201 miRNA transverse colon (Tissue)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 2.00 50.00 0.01 100.0 MIR542-201 miRNA transverse colon (Tissue)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 7.00 2.62 0.03 100.0 MIR500A-201 miRNA transverse colon (Tissue)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 204.00 76.40 0.98 100.0 MIR500A-201 miRNA transverse colon (Tissue)