ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 2038.00 1.69 87.25 99.37 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 7.00 0.01 0.30 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 41.00 0.03 1.76 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 78.00 0.06 3.34 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 293.00 0.24 12.54 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 22.00 0.02 0.94 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 4.00 0.00 0.17 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 372.00 0.31 15.93 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 20.00 0.02 0.86 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 49.00 0.04 2.10 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 2058.00 1.71 88.11 82.42 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 3.00 0.00 0.13 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 2911.00 2.41 124.63 94.48 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 7.00 0.01 0.30 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 17.00 0.01 0.73 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 4890.00 4.05 209.36 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 92.00 0.08 3.94 78.63 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 26.29 0.02 1.13 48.69 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 7.00 0.01 0.30 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 112.00 0.09 4.80 56.57 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 38.00 0.03 1.63 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 377.00 0.31 16.14 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 486.00 0.40 20.81 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 18.00 22.22 0.77 100.0 SNHG14-315 lncRNA GM23248 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 3.00 3.70 0.13 100.0 SNHG14-315 lncRNA GM23248 (Cell line)