ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 289.00 3.75 12.37 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 402.00 5.22 17.21 60.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 574.00 7.45 24.57 85.54 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 15.00 0.19 0.64 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 3.00 50.00 0.13 75.0 MIR3142HG-201 lncRNA GM23248 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 36.00 65.45 1.54 100.0 SNHG6-204 retained intron GM23248 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 639.00 18.25 27.36 100.0 MIR151A-201 miRNA GM23248 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 2534.00 72.38 108.49 90.79 MIR151A-201 miRNA GM23248 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 158.00 95.18 6.76 100.0 DENND3-221 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1.00 0.00 0.04 25.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 3.00 0.01 0.13 100.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 2.00 0.01 0.09 40.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 30.00 0.10 1.28 100.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 7.00 0.02 0.30 100.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1.00 0.00 0.04 50.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 3.00 0.01 0.13 60.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 6.00 18.75 0.26 100.0 HSPA8-211 retained intron GM23248 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 10.00 12.05 0.43 100.0 SCARNA9-201 lncRNA GM23248 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 9061.00 97.08 387.93 100.0 TAF1D-215 retained intron GM23248 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 24.00 0.26 1.03 100.0 TAF1D-215 retained intron GM23248 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4.00 22.22 0.17 100.0 HSPA8-215 retained intron GM23248 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2.00 3.08 0.09 100.0 RPS2-215 retained intron GM23248 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 10859.00 86.11 464.91 87.19 ENST00000548801 lncRNA GM23248 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 164.00 35.57 7.02 100.0 ENST00000554988 lncRNA GM23248 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 9.00 1.95 0.39 100.0 ENST00000554988 lncRNA GM23248 (Cell line)