ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 53.00 23.35 2.27 100.0 RPL7A-206 protein coding CDS not defined GM23248 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 16.00 7.05 0.69 100.0 RPL7A-206 protein coding CDS not defined GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 47666.00 83.50 2040.75 99.09 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.01 0.17 100.0 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 270.00 0.47 11.56 100.0 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 97.00 0.17 4.15 100.0 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 8712.00 15.26 372.99 99.47 RPL21-209 retained intron GM23248 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 89.00 46.35 3.81 100.0 GABRE-209 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 30.00 3.76 1.28 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 3.00 0.38 0.13 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 244.00 30.58 10.45 89.05 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 143.00 17.92 6.12 87.73 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 24.00 3.01 1.03 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 6.00 0.75 0.26 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 21.00 7.07 0.90 100.0 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 10.00 3.37 0.43 100.0 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 86.00 28.96 3.68 64.66 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 6.00 1.37 0.26 100.0 RN7SL2-201 misc RNA GM23248 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 96.00 21.97 4.11 96.97 RN7SL2-201 misc RNA GM23248 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 149.00 52.65 6.38 68.35 NOP56-217 protein coding CDS not defined GM23248 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 21.00 7.42 0.90 91.3 NOP56-217 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 17.00 0.86 0.73 70.83 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 775.00 39.06 33.18 85.26 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 257.00 12.95 11.00 89.86 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 6.00 0.30 0.26 100.0 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)