ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 8.00 2.09 0.34 100.0 LINC01783-201 lncRNA GM23248 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 3.00 75.00 0.13 100.0 RPS7P15-201 processed pseudogene GM23248 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 18.00 3.96 0.77 100.0 SNORD62B-201 snoRNA GM23248 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 5.00 1.10 0.21 100.0 SNORD62B-201 snoRNA GM23248 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 321.00 70.55 13.74 97.87 SNORD62B-201 snoRNA GM23248 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 0.22 0.04 100.0 SNORD62B-201 snoRNA GM23248 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 4.00 0.88 0.17 100.0 SNORD62B-201 snoRNA GM23248 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 10.00 90.91 0.43 100.0 MRPL32-203 nonsense mediated decay GM23248 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 221.00 98.22 9.46 100.0 ENST00000436739 lncRNA GM23248 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 7.00 3.74 0.30 100.0 TMEM107-204 protein coding GM23248 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 20.00 10.70 0.86 30.3 TMEM107-204 protein coding GM23248 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 133.00 28.54 5.69 100.0 SNHG16-201 lncRNA GM23248 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 261.00 56.01 11.17 87.88 SNHG16-201 lncRNA GM23248 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 2496.00 91.06 106.86 95.56 SNORD105B-201 snoRNA GM23248 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 369.00 58.11 15.80 76.08 SNORD121B-201 snoRNA GM23248 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 4624.00 94.56 197.97 99.08 SNORD127-201 snoRNA GM23248 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 27.00 0.55 1.16 100.0 SNORD127-201 snoRNA GM23248 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 953.00 89.65 40.80 100.0 SNORD42B-201 snoRNA GM23248 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1.00 0.29 0.04 100.0 RNY4P25-201 misc RNA GM23248 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 104.00 75.91 4.45 100.0 SNORD121A-201 snoRNA GM23248 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 52.00 20.72 2.23 62.65 SNORD126-201 snoRNA GM23248 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 177.00 70.52 7.58 88.5 SNORD126-201 snoRNA GM23248 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 757.00 92.77 32.41 98.44 SNORD124-201 snoRNA GM23248 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 2.00 1.46 0.09 100.0 SNHG12-201 retained intron GM23248 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 5.00 6.02 0.21 100.0 RPL3-212 retained intron GM23248 (Cell line)