ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1.00 100.00 0.04 100.0 MIR708-201 miRNA GM23248 (Cell line)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 3.00 25.00 0.13 100.0 MIR543-201 miRNA GM23248 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 2.00 100.00 0.09 100.0 MIR301B-201 miRNA GM23248 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 51.00 60.71 2.18 86.44 RNU1-82P-201 snRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 11.00 1.60 0.47 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 59.00 8.58 2.53 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 79.00 11.48 3.38 100.0 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 260.00 37.79 11.13 74.07 SNORD66-201 snoRNA GM23248 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 8.00 50.00 0.34 100.0 U3.17-201 snoRNA GM23248 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 112.00 64.37 4.80 100.0 SNORD17-201 snoRNA GM23248 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 699.00 72.74 29.93 100.0 SNORD72-201 snoRNA GM23248 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 69.00 76.67 2.95 100.0 SNORD70B-201 snoRNA GM23248 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 112.00 33.14 4.80 75.17 RNY4P18-201 misc RNA GM23248 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 506.00 69.89 21.66 100.0 SNORD90-201 snoRNA GM23248 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 167.00 23.07 7.15 68.72 SNORD90-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 96.00 4.47 4.11 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 1662.00 77.37 71.16 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 47.00 2.19 2.01 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 142.00 6.61 6.08 100.0 SNORD69-201 snoRNA GM23248 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 42.00 52.50 1.80 65.62 SNORD70-201 snoRNA GM23248 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 267.00 4.15 11.43 100.0 B4GALNT2-202 protein coding GM23248 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 5440.00 84.51 232.91 92.27 B4GALNT2-202 protein coding GM23248 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 40.00 85.11 1.71 100.0 NDE1-202 protein coding GM23248 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 7.00 63.64 0.30 100.0 MIR450B-201 miRNA GM23248 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 10.00 66.67 0.43 100.0 MIR887-201 miRNA GM23248 (Cell line)