ENCFF015UJX

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR917CQJ
Description: Part of ENCODE experiment ENCSR917CQJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 37.00 0.37 0.21 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1552.00 15.39 8.75 88.43 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 74.00 98.67 0.42 100.0 MRPL32-203 nonsense mediated decay spleen (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 25.00 64.10 0.14 100.0 ENST00000436739 lncRNA spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 4.00 0.04 0.02 2.45 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 5975.00 59.15 33.67 85.58 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 625.00 6.19 3.52 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 402.00 44.27 2.27 100.0 SNHG16-201 lncRNA spleen (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 22561.00 86.51 127.15 94.29 SNORD105B-201 snoRNA spleen (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 710.00 33.27 4.00 51.01 SNORD121B-201 snoRNA spleen (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 350.00 33.52 1.97 100.0 SNORD127-201 snoRNA spleen (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 7518.00 90.73 42.37 100.0 SNORD42B-201 snoRNA spleen (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 65.00 1.26 0.37 100.0 RNY4P25-201 misc RNA spleen (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 199.00 77.73 1.12 100.0 SNORD121A-201 snoRNA spleen (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1479.00 94.32 8.34 100.0 SNORD126-201 snoRNA spleen (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 1326.00 38.70 7.47 100.0 SNHG12-201 retained intron spleen (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 2637.00 94.25 14.86 100.0 SMC1A-204 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 490.00 15.62 2.76 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1268.00 40.43 7.15 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2657.00 78.08 14.97 100.0 RPS8-206 protein coding CDS not defined spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 423.00 6.32 2.38 100.0 RPL13-207 retained intron spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3522.00 52.66 19.85 100.0 RPL13-207 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1453.00 0.18 8.19 53.4 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 6290.00 0.77 35.45 44.65 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 465.00 0.06 2.62 25.98 EIF4A2-219 retained intron spleen (Tissue)