ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 2.00 1.32 0.01 100.0 HCN2-201 protein coding Karpas-422 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 4054.00 41.11 28.25 100.0 ATP5MC3-201 protein coding Karpas-422 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 741.00 89.82 5.16 100.0 CDC25A-201 protein coding Karpas-422 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 6.00 2.69 0.04 100.0 RUNX3-201 protein coding Karpas-422 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 495.00 73.66 3.45 100.0 BLOC1S4-201 protein coding Karpas-422 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 1473.00 35.16 10.27 100.0 ATAD5-201 protein coding Karpas-422 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 146.00 4.88 1.02 100.0 SLITRK5-201 protein coding Karpas-422 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 18.00 21.43 0.13 100.0 HASPIN-201 protein coding Karpas-422 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 65.00 18.11 0.45 100.0 PRR14L-201 protein coding Karpas-422 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 487.00 93.12 3.39 100.0 ATG101-201 protein coding Karpas-422 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 31.00 22.96 0.22 100.0 PRICKLE1-201 protein coding Karpas-422 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 56.00 40.88 0.39 100.0 PBLD-204 protein coding Karpas-422 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 15905.00 94.79 110.84 98.45 MIRLET7BHG-201 lncRNA Karpas-422 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 139.00 0.83 0.97 89.68 MIRLET7BHG-201 lncRNA Karpas-422 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 21.00 100.00 0.15 100.0 MIR375-201 miRNA Karpas-422 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 36906.00 88.84 257.19 100.0 MIR30E-201 miRNA Karpas-422 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 3659.00 8.81 25.50 100.0 MIR30E-201 miRNA Karpas-422 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1230.00 56.32 8.57 100.0 MIR29A-201 miRNA Karpas-422 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 199.00 86.90 1.39 100.0 MIR345-201 miRNA Karpas-422 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 82494.00 99.21 574.88 100.0 MIR16-2-201 miRNA Karpas-422 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1.00 100.00 0.01 100.0 MIR340-201 miRNA Karpas-422 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 2050.00 76.41 14.29 100.0 MIR107-201 miRNA Karpas-422 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 1.00 100.00 0.01 100.0 MIR381-201 miRNA Karpas-422 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 12938.00 85.47 90.16 90.66 MIR103A2-201 miRNA Karpas-422 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 840.00 23.64 5.85 100.0 MIR425-201 miRNA Karpas-422 (Cell line)