ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 2595.42 11.78 18.09 84.24 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 280.00 89.17 1.95 100.0 ENST00000756452 lncRNA Karpas-422 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 383.00 19.66 2.67 100.0 ENST00000760093 lncRNA Karpas-422 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 30.00 1.54 0.21 100.0 ENST00000760093 lncRNA Karpas-422 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 1392.00 47.51 9.70 94.25 SNHG14-356 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 14456.00 38.26 100.74 71.08 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 783.00 2.07 5.46 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_397_430_+ 397–430 1.00 0.00 0.01 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 5925.00 15.68 41.29 58.97 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000762395.1 ENST00000762395.1_307_324_+ 307–324 1.00 0.00 0.01 100.0 LINC02806-241 lncRNA Karpas-422 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 1030.00 83.33 7.18 100.0 EHBP1-AS1-210 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 70.00 5.25 0.49 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 544.00 40.78 3.79 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 12.00 0.90 0.08 100.0 ENST00000770398 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 195.00 2.13 1.36 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 19.00 0.21 0.13 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 4338.00 47.29 30.23 80.56 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 174.00 1.90 1.21 100.0 ENST00000771298 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 731.00 31.36 5.09 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 2.00 0.09 0.01 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 50.00 2.15 0.35 100.0 ENST00000772672 lncRNA Karpas-422 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 372.00 26.51 2.59 100.0 ENST00000773843 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 246.00 0.07 1.71 100.0 SNHG12-223 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 70037.00 20.07 488.07 85.26 SNHG12-223 lncRNA Karpas-422 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 276758.00 79.32 1928.67 99.28 SNHG12-223 lncRNA Karpas-422 (Cell line)