ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 2001.00 0.14 13.94 49.32 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 599800.00 41.45 4179.89 85.46 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 2761.00 0.19 19.24 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 738623.00 51.04 5147.32 97.35 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1048.00 0.07 7.30 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 4793.00 0.33 33.40 60.47 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 5924.00 0.41 41.28 84.23 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 8663.00 0.60 60.37 91.97 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 7599.00 0.53 52.96 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 4857.00 0.34 33.85 54.19 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 1.00 0.00 0.01 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 92.00 0.01 0.64 100.0 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6568.00 0.45 45.77 69.47 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3113.00 0.22 21.69 63.11 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2672.00 0.18 18.62 41.53 EIF4A2-219 retained intron Karpas-422 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 14838.00 90.00 103.40 100.0 RPS8-207 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 362.00 12.80 2.52 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 653.00 23.08 4.55 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 251.00 8.87 1.75 100.0 RPL7A-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 91.00 0.02 0.63 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 234258.00 57.69 1632.50 96.26 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1777.00 0.44 12.38 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 800.00 0.20 5.58 100.0 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 163017.00 40.15 1136.03 99.63 RPL21-209 retained intron Karpas-422 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 8.00 0.00 0.06 100.0 RPL13A-212 retained intron Karpas-422 (Cell line)