ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 99.00 2.73 0.69 100.0 RNU2-36P-201 snRNA Karpas-422 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 401758.00 95.48 2799.77 97.26 SNORD19C-201 snoRNA Karpas-422 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 1543.00 0.37 10.75 100.0 SNORD19C-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 5634.00 7.02 39.26 100.0 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 228.00 0.28 1.59 100.0 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 69652.00 86.79 485.39 97.78 SNORD12B-201 snoRNA Karpas-422 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 510.00 17.11 3.55 100.0 Y_RNA.609-201 misc RNA Karpas-422 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 549.00 32.78 3.83 100.0 Y_RNA.612-201 misc RNA Karpas-422 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 24089.00 93.64 167.87 99.2 SNORD71-201 snoRNA Karpas-422 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 481.00 1.87 3.35 100.0 SNORD71-201 snoRNA Karpas-422 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 52.00 0.20 0.36 100.0 SNORD71-201 snoRNA Karpas-422 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 17154.00 78.92 119.54 93.08 MIR194-2HG-201 lncRNA Karpas-422 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 4064.00 18.70 28.32 70.89 MIR194-2HG-201 lncRNA Karpas-422 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 65.00 0.99 0.45 100.0 LINC01783-201 lncRNA Karpas-422 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 24.00 20.51 0.17 100.0 RPS7P15-201 processed pseudogene Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 380.00 1.78 2.65 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 12416.00 58.11 86.52 78.39 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 40.00 0.19 0.28 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 130.00 0.61 0.91 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 243.00 1.14 1.69 100.0 SNORD62B-201 snoRNA Karpas-422 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1313.00 97.19 9.15 100.0 MRPL32-203 nonsense mediated decay Karpas-422 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 297.00 96.74 2.07 100.0 ENST00000436739 lncRNA Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1032.00 4.25 7.19 59.24 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 8841.00 36.38 61.61 100.0 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 200.00 0.82 1.39 29.81 TMEM107-204 protein coding Karpas-422 (Cell line)