ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 717.00 32.56 0.86 100.0 HCN2-201 protein coding GM23338 (Cell line)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 5.26 0.00 100.0 SLC49A4-201 protein coding GM23338 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 106.00 28.57 0.13 100.0 ATP5MC3-201 protein coding GM23338 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 53240.00 92.16 63.89 100.0 CDC25A-201 protein coding GM23338 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 8.00 5.23 0.01 100.0 RUNX3-201 protein coding GM23338 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 116.00 70.73 0.14 100.0 BLOC1S4-201 protein coding GM23338 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 32.00 8.36 0.04 100.0 ATAD5-201 protein coding GM23338 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 1356.00 63.81 1.63 100.0 SLITRK5-201 protein coding GM23338 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 1410.00 62.56 1.69 100.0 HASPIN-201 protein coding GM23338 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 49.00 6.86 0.06 100.0 PRR14L-201 protein coding GM23338 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 1961.00 96.65 2.35 100.0 ATG101-201 protein coding GM23338 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 96.00 31.48 0.12 100.0 PRICKLE1-201 protein coding GM23338 (Cell line)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 86.00 95.56 0.10 98.85 MIR133A2-201 miRNA GM23338 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 1021.00 30.66 1.23 100.0 PBLD-204 protein coding GM23338 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 1624.00 93.60 1.95 99.82 MIRLET7BHG-201 lncRNA GM23338 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 9.00 0.52 0.01 100.0 MIRLET7BHG-201 lncRNA GM23338 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 85.00 77.27 0.10 100.0 MIR375-201 miRNA GM23338 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 0.91 0.00 100.0 MIR375-201 miRNA GM23338 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 558.00 10.03 0.67 100.0 MIR30E-201 miRNA GM23338 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4872.00 87.58 5.85 100.0 MIR30E-201 miRNA GM23338 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 37.00 78.72 0.04 100.0 MIR29A-201 miRNA GM23338 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 234.00 86.35 0.28 100.0 MIR345-201 miRNA GM23338 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 6178.00 98.78 7.41 100.0 MIR16-2-201 miRNA GM23338 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 38.00 5.08 0.05 100.0 MIR340-201 miRNA GM23338 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 676.00 90.37 0.81 100.0 MIR340-201 miRNA GM23338 (Cell line)