ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 813.00 13.86 0.98 100.0 RNY3-201 misc RNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 3317.00 14.77 3.98 73.3 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 4080.53 18.16 4.90 64.1 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 3184.00 14.17 3.82 100.0 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 1292.00 5.75 1.55 100.0 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 259.00 1.15 0.31 100.0 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 307.00 1.37 0.37 75.99 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 2527.08 11.25 3.03 39.7 SNORD82-201 snoRNA GM23338 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 872.00 97.54 1.05 99.66 MIR146B-201 miRNA GM23338 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 19.00 9.84 0.02 100.0 SNHG20-201 lncRNA GM23338 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 76.00 13.48 0.09 100.0 ATP5MK-205 protein coding GM23338 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 131.00 23.23 0.16 100.0 ATP5MK-205 protein coding GM23338 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 324.00 33.09 0.39 100.0 LINC01556-201 lncRNA GM23338 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 837.00 70.45 1.00 100.0 ATAD3A-202 protein coding GM23338 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 195.00 31.71 0.23 65.88 TMC5-202 protein coding GM23338 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 3357.00 88.62 4.03 100.0 ZMYM2-203 protein coding GM23338 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 237.00 2.13 0.28 100.0 RNVU1-7-201 snRNA GM23338 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 7228.00 92.64 8.67 100.0 SNORD24-201 snoRNA GM23338 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 1382.00 88.14 1.66 100.0 Y_RNA.389-201 misc RNA GM23338 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 145471.00 75.81 174.57 97.05 SNORD101-201 snoRNA GM23338 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 38559.00 20.09 46.27 86.65 SNORD101-201 snoRNA GM23338 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 178.00 0.09 0.21 100.0 SNORD101-201 snoRNA GM23338 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 137.00 0.07 0.16 100.0 SNORD101-201 snoRNA GM23338 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 231027.00 97.49 277.25 100.0 SNORD37-201 snoRNA GM23338 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 59631.00 62.48 71.56 92.1 SNORD59A-201 snoRNA GM23338 (Cell line)